J3_4V64_023
3D structure
- PDB id
- 4V64 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CUA*UAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 4V64|1|BB|U|2334, 4V64|1|BB|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V64_023 not in the Motif Atlas
- Homologous match to J3_4WF9_008
- Geometric discrepancy: 0.216
- The information below is about J3_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V64|1|BB|C|2295
4V64|1|BB|U|2296
4V64|1|BB|A|2297
*
4V64|1|BB|U|2321
4V64|1|BB|A|2322
4V64|1|BB|G|2323
*
4V64|1|BB|C|2332
4V64|1|BB|A|2333
4V64|1|BB|U|2334
4V64|1|BB|A|2335
4V64|1|BB|A|2336
4V64|1|BB|G|2337
Current chains
- Chain BB
- 23S ribosomal RNA
Nearby chains
- Chain BA
- 5S ribosomal RNA; 5S rRNA
- Chain BF
- 50S ribosomal protein L5
- Chain BO
- 50S ribosomal protein L18
- Chain BW
- 50S ribosomal protein L27
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