J3_4V64_030

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V64|1|CA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V64_030 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0808

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V64|1|CA|C|826
4V64|1|CA|U|827
4V64|1|CA|U|828
4V64|1|CA|G|829
*
4V64|1|CA|C|857
4V64|1|CA|G|858
4V64|1|CA|G|859
4V64|1|CA|A|860
4V64|1|CA|G|861
*
4V64|1|CA|C|868
4V64|1|CA|G|869
4V64|1|CA|U|870
4V64|1|CA|U|871
4V64|1|CA|A|872
4V64|1|CA|A|873
4V64|1|CA|G|874

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CH

30S ribosomal protein S8

Chain CU

30S ribosomal protein S21