J3_4V66_004

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V66|1|A1|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V66_004 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.4649

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

4V66|1|A1|C|990
4V66|1|A1|U|991
4V66|1|A1|U|992
4V66|1|A1|G|993
4V66|1|A1|A|994
4V66|1|A1|C|995
4V66|1|A1|A|996
4V66|1|A1|U|997
*
4V66|1|A1|A|1044
4V66|1|A1|C|1045
4V66|1|A1|A|1046
4V66|1|A1|G|1047
*
4V66|1|A1|C|1210
4V66|1|A1|U|1211
4V66|1|A1|U|1212
4V66|1|A1|A|1213
4V66|1|A1|C|1214
4V66|1|A1|G|1215

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S14