J3_4V67_004

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V67|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V67_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0755

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V67|1|AA|C|826
4V67|1|AA|U|827
4V67|1|AA|A|828
4V67|1|AA|G|829
*
4V67|1|AA|C|857
4V67|1|AA|G|858
4V67|1|AA|A|859
4V67|1|AA|A|860
4V67|1|AA|G|861
*
4V67|1|AA|C|868
4V67|1|AA|G|869
4V67|1|AA|U|870
4V67|1|AA|U|871
4V67|1|AA|A|872
4V67|1|AA|A|873
4V67|1|AA|G|874

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8