J3_4V68_014

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

4V68|1|BA|A|74

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V68_014 not in the Motif Atlas

Homologous match to J3_7RQB_002

Geometric discrepancy: 0.1113

The information below is about J3_7RQB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84625.2

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V68|1|BA|A|56
4V68|1|BA|C|57
*
4V68|1|BA|G|70
4V68|1|BA|A|71
4V68|1|BA|U|72
4V68|1|BA|A|73
4V68|1|BA|A|74
4V68|1|BA|G|75
4V68|1|BA|C|76
*
4V68|1|BA|G|110
4V68|1|BA|A|111
4V68|1|BA|U|112
4V68|1|BA|G|113
4V68|1|BA|U|114

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L29

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23