J3_4V68_016

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V68|1|BA|G|686, 4V68|1|BA|G|792

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V68_016 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1163

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V68|1|BA|C|683
4V68|1|BA|G|684
4V68|1|BA|A|685
4V68|1|BA|G|686
4V68|1|BA|C|687
4V68|1|BA|U|688
4V68|1|BA|A|689
*
4V68|1|BA|U|773
4V68|1|BA|A|774
4V68|1|BA|G|775
*
4V68|1|BA|C|791
4V68|1|BA|G|792
4V68|1|BA|A|793
4V68|1|BA|G|794

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2