J3_4V68_031

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V68|1|BA|U|504, 4V68|1|BA|G|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V68_031 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2261

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V68|1|BA|G|30
4V68|1|BA|C|31
*
4V68|1|BA|G|474
4V68|1|BA|U|475
4V68|1|BA|G|476
4V68|1|BA|A|477
4V68|1|BA|A|478
4V68|1|BA|A|479
4V68|1|BA|A|480
4V68|1|BA|G|481
4V68|1|BA|A|482
4V68|1|BA|A|483
4V68|1|BA|C|484
*
4V68|1|BA|G|496
4V68|1|BA|A|497
4V68|1|BA|G|498
4V68|1|BA|U|499
4V68|1|BA|G|500
4V68|1|BA|A|501
4V68|1|BA|A|502
4V68|1|BA|A|503
4V68|1|BA|U|504
4V68|1|BA|A|505
4V68|1|BA|G|506
4V68|1|BA|A|507
4V68|1|BA|G|508
4V68|1|BA|C|509
4V68|1|BA|C|510

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BU

50S ribosomal protein L20

Chain BW

50S ribosomal protein L22

Chain BY

50S ribosomal protein L24