J3_4V68_033

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V68|1|BA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V68_033 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0799

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V68|1|BA|C|297
4V68|1|BA|G|298
4V68|1|BA|A|299
4V68|1|BA|A|300
4V68|1|BA|G|301
*
4V68|1|BA|C|316
4V68|1|BA|G|317
4V68|1|BA|C|318
4V68|1|BA|C|319
4V68|1|BA|A|320
4V68|1|BA|G|321
4V68|1|BA|A|322
4V68|1|BA|G|323
4V68|1|BA|A|324
4V68|1|BA|G|325
*
4V68|1|BA|C|337
4V68|1|BA|G|338
4V68|1|BA|U|339
4V68|1|BA|A|340
4V68|1|BA|G|341

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BY

50S ribosomal protein L24