J3_4V68_039

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UAAAC*GGGUCGG*CG

Length

14 nucleotides

Bulged bases

4V68|1|BA|C|271|||Z

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V68_039 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1279

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V68|1|BA|U|269
4V68|1|BA|A|270
4V68|1|BA|A|271
4V68|1|BA|A|271|||A
4V68|1|BA|C|271|||B
*
4V68|1|BA|G|271|||V
4V68|1|BA|G|271|||W
4V68|1|BA|G|271|||X
4V68|1|BA|U|271|||Y
4V68|1|BA|C|271|||Z
4V68|1|BA|G|272
4V68|1|BA|G|272|||B
*
4V68|1|BA|C|366
4V68|1|BA|G|370

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BI

50S ribosomal protein L9