3D structure

PDB id
4V69 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ternary complex-bound E.coli 70S ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
6.7 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
4V69|1|AA|U|723
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V69_003 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1739
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V69|1|AA|U|672
4V69|1|AA|A|673
*
4V69|1|AA|U|717
4V69|1|AA|A|718
4V69|1|AA|C|719
4V69|1|AA|C|720
4V69|1|AA|G|721
4V69|1|AA|G|722
4V69|1|AA|U|723
4V69|1|AA|G|724
4V69|1|AA|G|725
*
4V69|1|AA|C|732
4V69|1|AA|G|733
4V69|1|AA|G|734

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AF
30S ribosomal protein S6
Chain AK
30S ribosomal protein S11
Chain AR
30S ribosomal protein S18
Chain AU
30S ribosomal protein S21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3297 s