3D structure

PDB id
4V69 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ternary complex-bound E.coli 70S ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
6.7 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
4V69|1|AA|A|958, 4V69|1|AA|A|975, 4V69|1|AA|G|976
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V69_006 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.2116
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V69|1|AA|U|955
4V69|1|AA|U|956
4V69|1|AA|U|957
4V69|1|AA|A|958
4V69|1|AA|A|959
4V69|1|AA|U|960
4V69|1|AA|U|961
4V69|1|AA|C|962
*
4V69|1|AA|G|973
4V69|1|AA|A|974
4V69|1|AA|A|975
4V69|1|AA|G|976
4V69|1|AA|A|977
4V69|1|AA|A|978
4V69|1|AA|C|979
4V69|1|AA|C|980
4V69|1|AA|U|981
4V69|1|AA|U|982
4V69|1|AA|A|983
4V69|1|AA|C|984
*
4V69|1|AA|G|1221
4V69|1|AA|G|1222
4V69|1|AA|C|1223
4V69|1|AA|U|1224
4V69|1|AA|A|1225

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AJ
30S ribosomal protein S10
Chain AM
30S ribosomal protein S13
Chain AN
30S ribosomal protein S14
Chain AS
30S ribosomal protein S19
Chain AY
A/T-site tRNA Phe

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2083 s