J3_4V69_031

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V69|1|BB|A|504, 4V69|1|BB|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V69_031 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.1592

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V69|1|BB|G|30
4V69|1|BB|C|31
*
4V69|1|BB|G|474
4V69|1|BB|C|475
4V69|1|BB|G|476
4V69|1|BB|A|477
4V69|1|BB|A|478
4V69|1|BB|A|479
4V69|1|BB|A|480
4V69|1|BB|G|481
4V69|1|BB|A|482
4V69|1|BB|A|483
4V69|1|BB|C|484
*
4V69|1|BB|G|496
4V69|1|BB|A|497
4V69|1|BB|G|498
4V69|1|BB|U|499
4V69|1|BB|G|500
4V69|1|BB|A|501
4V69|1|BB|A|502
4V69|1|BB|A|503
4V69|1|BB|A|504
4V69|1|BB|A|505
4V69|1|BB|G|506
4V69|1|BB|A|507
4V69|1|BB|A|508
4V69|1|BB|C|509
4V69|1|BB|C|510

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24