J3_4V6D_044

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6D_044 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.4152

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4V6D|1|DA|G|1055
4V6D|1|DA|G|1056
4V6D|1|DA|A|1057
*
4V6D|1|DA|U|1081
4V6D|1|DA|U|1082
4V6D|1|DA|U|1083
4V6D|1|DA|A|1084
4V6D|1|DA|A|1085
4V6D|1|DA|A|1086
4V6D|1|DA|G|1087
*
4V6D|1|DA|C|1102
4V6D|1|DA|A|1103
4V6D|1|DA|C|1104

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DI

50S ribosomal protein L11