J3_4V6F_072

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

4V6F|1|DA|A|1084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6F_072 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.4412

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4V6F|1|DA|G|1055
4V6F|1|DA|G|1056
4V6F|1|DA|A|1057
*
4V6F|1|DA|U|1081
4V6F|1|DA|U|1082
4V6F|1|DA|U|1083
4V6F|1|DA|A|1084
4V6F|1|DA|A|1085
4V6F|1|DA|A|1086
4V6F|1|DA|G|1087
*
4V6F|1|DA|C|1102
4V6F|1|DA|A|1103
4V6F|1|DA|C|1104

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DL

50S ribosomal protein L11

Chain DY

50S ribosomal protein L10