J3_4V6I_001

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6I_001 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.2811

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

4V6I|1|CA|A|41
4V6I|1|CA|G|42
*
4V6I|1|CA|C|433
4V6I|1|CA|G|434
4V6I|1|CA|C|435
4V6I|1|CA|A|436
4V6I|1|CA|A|437
4V6I|1|CA|A|438
4V6I|1|CA|U|439
*
4V6I|1|CA|A|464
4V6I|1|CA|G|465
4V6I|1|CA|U|466

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AL

40S ribosomal protein rpS23 (S12p)