J3_4V6I_005
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6I_005 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.2705
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V6I|1|CA|U|1168
4V6I|1|CA|G|1169
4V6I|1|CA|G|1170
4V6I|1|CA|A|1171
*
4V6I|1|CA|U|1468
4V6I|1|CA|A|1469
4V6I|1|CA|C|1470
*
4V6I|1|CA|G|1574
4V6I|1|CA|G|1575
4V6I|1|CA|A|1576
4V6I|1|CA|A|1577
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AF
- 40S ribosomal protein rpS5 (S7p)
- Chain AI
- 40S ribosomal protein rpS16 (S9p)
- Chain AM
- 40S ribosomal protein rpS18 (S13p)
- Chain AS
- 40S ribosomal protein rpS19 (S19e)
- Chain CB
- Transfer RNA; tRNA
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