J3_4V6I_012
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6I_012 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.1934
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
4V6I|1|DA|A|369
4V6I|1|DA|U|370
4V6I|1|DA|G|371
4V6I|1|DA|A|372
4V6I|1|DA|A|373
4V6I|1|DA|A|374
4V6I|1|DA|A|375
4V6I|1|DA|G|376
*
4V6I|1|DA|C|403
4V6I|1|DA|G|404
*
4V6I|1|DB|C|19
4V6I|1|DB|U|20
Current chains
- Chain DA
- 25S rRNA
- Chain DB
- 5.8S rRNA
Nearby chains
- Chain BD
- 60S ribosomal protein rpL4 (L4p)
- Chain BY
- 60S ribosomal protein rpL26 (L24p)
- Chain Bo
- 60S ribosomal protein rpL39 (L39e)
Coloring options: