J3_4V6I_014

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AUAG*CGUAG*UCGAAU

Length

15 nucleotides

Bulged bases

4V6I|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6I_014 not in the Motif Atlas

Homologous match to J3_5TBW_005

Geometric discrepancy: 0.1933

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V6I|1|DA|A|828
4V6I|1|DA|U|829
4V6I|1|DA|A|830
4V6I|1|DA|G|831
*
4V6I|1|DA|C|863
4V6I|1|DA|G|864
4V6I|1|DA|U|865
4V6I|1|DA|A|866
4V6I|1|DA|G|867
*
4V6I|1|DA|U|892
4V6I|1|DA|C|893
4V6I|1|DA|G|894
4V6I|1|DA|A|895
4V6I|1|DA|A|896
4V6I|1|DA|U|897

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein rpL2 (L2p)

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain Bm

60S ribosomal protein rpL43 (L37ae)

Chain Bp

60S ribosomal protein rpL40 (L40e)