J3_4V6I_016

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6I_016 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.479

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

4V6I|1|DA|G|1230
4V6I|1|DA|A|1231
4V6I|1|DA|C|1232
*
4V6I|1|DA|G|1256
4V6I|1|DA|C|1257
4V6I|1|DA|U|1258
4V6I|1|DA|A|1259
4V6I|1|DA|A|1260
4V6I|1|DA|G|1261
4V6I|1|DA|G|1262
*
4V6I|1|DA|C|1277
4V6I|1|DA|A|1278
4V6I|1|DA|C|1279

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BJ

60S ribosomal protein rpL12 (L11p)

Chain Bs

60S acidic ribosomal protein rpP0 (L10P)