J3_4V6I_019
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6I_019 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1528
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
4V6I|1|DA|U|1526
4V6I|1|DA|C|1527
4V6I|1|DA|G|1528
4V6I|1|DA|A|1529
4V6I|1|DA|U|1530
4V6I|1|DA|C|1531
*
4V6I|1|DA|G|1591
4V6I|1|DA|G|1592
4V6I|1|DA|A|1593
4V6I|1|DA|A|1594
4V6I|1|DA|U|1595
*
4V6I|1|DA|A|1612
4V6I|1|DA|A|1613
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BX
- 60S ribosomal protein rpL25 (L23p)
- Chain Ba
- 60S ribosomal protein rpL27 (L27e)
- Chain Bn
- 60S ribosomal protein rpL38 (L38e)
- Chain Bo
- 60S ribosomal protein rpL39 (L39e)
- Chain Bp
- 60S ribosomal protein rpL40 (L40e)
- Chain DB
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: