3D structure

PDB id
4V6I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
8.8 Å

Loop

Sequence
GUC*GCCUAUCGAUCC*GGUGCC
Length
21 nucleotides
Bulged bases
4V6I|1|DA|A|2758, 4V6I|1|DA|U|2759, 4V6I|1|DA|C|2797
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6I_024 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.4776
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

4V6I|1|DA|G|2651
4V6I|1|DA|U|2652
4V6I|1|DA|C|2653
*
4V6I|1|DA|G|2754
4V6I|1|DA|C|2755
4V6I|1|DA|C|2756
4V6I|1|DA|U|2757
4V6I|1|DA|A|2758
4V6I|1|DA|U|2759
4V6I|1|DA|C|2760
4V6I|1|DA|G|2761
4V6I|1|DA|A|2762
4V6I|1|DA|U|2763
4V6I|1|DA|C|2764
4V6I|1|DA|C|2765
*
4V6I|1|DA|G|2793
4V6I|1|DA|G|2794
4V6I|1|DA|U|2795
4V6I|1|DA|G|2796
4V6I|1|DA|C|2797
4V6I|1|DA|C|2798

Current chains

Chain DA
25S rRNA

Nearby chains

Chain BO
60S ribosomal protein rpL28 (L15p)
Chain BU
60S ribosomal protein rpL21 (L21e)
Chain Br
60S ribosomal protein rpL42 (L44e)

Coloring options:


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