J3_4V6I_024
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 4V6I|1|DA|A|2758, 4V6I|1|DA|U|2759, 4V6I|1|DA|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6I_024 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.4776
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V6I|1|DA|G|2651
4V6I|1|DA|U|2652
4V6I|1|DA|C|2653
*
4V6I|1|DA|G|2754
4V6I|1|DA|C|2755
4V6I|1|DA|C|2756
4V6I|1|DA|U|2757
4V6I|1|DA|A|2758
4V6I|1|DA|U|2759
4V6I|1|DA|C|2760
4V6I|1|DA|G|2761
4V6I|1|DA|A|2762
4V6I|1|DA|U|2763
4V6I|1|DA|C|2764
4V6I|1|DA|C|2765
*
4V6I|1|DA|G|2793
4V6I|1|DA|G|2794
4V6I|1|DA|U|2795
4V6I|1|DA|G|2796
4V6I|1|DA|C|2797
4V6I|1|DA|C|2798
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BO
- 60S ribosomal protein rpL28 (L15p)
- Chain BU
- 60S ribosomal protein rpL21 (L21e)
- Chain Br
- 60S ribosomal protein rpL42 (L44e)
Coloring options: