J3_4V6I_031

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAG*CUUG

Length

27 nucleotides

Bulged bases

4V6I|1|DA|U|343, 4V6I|1|DA|A|351, 4V6I|1|DB|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6I_031 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.1603

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4V6I|1|DA|C|340
4V6I|1|DA|G|341
4V6I|1|DA|A|342
4V6I|1|DA|U|343
4V6I|1|DA|A|344
4V6I|1|DA|G|345
4V6I|1|DA|C|346
4V6I|1|DA|G|347
4V6I|1|DA|A|348
4V6I|1|DA|A|349
4V6I|1|DA|C|350
4V6I|1|DA|A|351
4V6I|1|DA|A|352
4V6I|1|DA|G|353
4V6I|1|DA|U|354
4V6I|1|DA|A|355
4V6I|1|DA|C|356
*
4V6I|1|DA|G|363
4V6I|1|DA|G|364
4V6I|1|DA|A|365
4V6I|1|DA|A|366
4V6I|1|DA|A|367
4V6I|1|DA|G|368
*
4V6I|1|DB|C|21
4V6I|1|DB|U|22
4V6I|1|DB|U|23
4V6I|1|DB|G|24

Current chains

Chain DA

25S rRNA

Chain DB

5.8S rRNA

Nearby chains

Chain BD

60S ribosomal protein rpL4 (L4p)

Chain BY

60S ribosomal protein rpL26 (L24p)

Chain Bl

60S ribosomal protein rpL37 (L37e)

Chain Bo

60S ribosomal protein rpL39 (L39e)