J3_4V6I_036
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6I_036 not in the Motif Atlas
- Homologous match to J3_8C3A_055
- Geometric discrepancy: 0.1906
- The information below is about J3_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10980.1
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V6I|1|DA|A|1654
4V6I|1|DA|G|1655
4V6I|1|DA|A|1656
4V6I|1|DA|C|1657
4V6I|1|DA|G|1658
*
4V6I|1|DA|C|1791
4V6I|1|DA|C|1792
*
4V6I|1|DA|G|1796
4V6I|1|DA|A|1797
4V6I|1|DA|A|1798
4V6I|1|DA|A|1799
4V6I|1|DA|A|1800
4V6I|1|DA|U|1801
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein rpL2 (L2p)
- Chain Ba
- 60S ribosomal protein rpL27 (L27e)
- Chain Bm
- 60S ribosomal protein rpL43 (L37ae)
- Chain Bp
- 60S ribosomal protein rpL40 (L40e)
Coloring options: