J3_4V6I_038
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AUUG*CUUAU*AGACAUU
- Length
- 16 nucleotides
- Bulged bases
- 4V6I|1|DA|U|2514
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6I_038 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.2351
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V6I|1|DA|A|2432
4V6I|1|DA|U|2433
4V6I|1|DA|U|2434
4V6I|1|DA|G|2435
*
4V6I|1|DA|C|2512
4V6I|1|DA|U|2513
4V6I|1|DA|U|2514
4V6I|1|DA|A|2515
4V6I|1|DA|U|2516
*
4V6I|1|DA|A|2591
4V6I|1|DA|G|2592
4V6I|1|DA|A|2593
4V6I|1|DA|C|2594
4V6I|1|DA|A|2595
4V6I|1|DA|U|2596
4V6I|1|DA|U|2597
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein rpL2 (L2p)
- Chain BH
- 60S ribosomal protein rpL8 (L7ae)
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
- Chain Bk
- 60S ribosomal protein rpL36 (L36e)
Coloring options: