J3_4V6K_013

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

4V6K|1|AB|U|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6K_013 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.3075

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V6K|1|AB|G|2812
4V6K|1|AB|A|2813
4V6K|1|AB|A|2814
4V6K|1|AB|C|2815
*
4V6K|1|AB|G|2831
4V6K|1|AB|U|2832
4V6K|1|AB|U|2833
4V6K|1|AB|G|2834
4V6K|1|AB|A|2835
4V6K|1|AB|U|2836
*
4V6K|1|AB|A|2882
4V6K|1|AB|A|2883
4V6K|1|AB|U|2884
4V6K|1|AB|G|2885
4V6K|1|AB|A|2886
4V6K|1|AB|A|2887
4V6K|1|AB|C|2888

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AO

50S ribosomal protein L17

Chain Ac

50S ribosomal protein L32