J3_4V6K_024

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6K_024 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.2026

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V6K|1|BA|U|1073
4V6K|1|BA|G|1074
*
4V6K|1|BA|U|1083
4V6K|1|BA|G|1084
4V6K|1|BA|U|1085
4V6K|1|BA|U|1086
4V6K|1|BA|G|1087
*
4V6K|1|BA|C|1098
4V6K|1|BA|G|1099
4V6K|1|BA|C|1100
4V6K|1|BA|A|1101
4V6K|1|BA|A|1102

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BF

30S ribosomal protein S2

Chain BI

30S ribosomal protein S5

Chain BY

30S ribosomal protein S21