J3_4V6K_026

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V6K|1|BA|U|1240, 4V6K|1|BA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6K_026 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.2576

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V6K|1|BA|C|1237
4V6K|1|BA|A|1238
4V6K|1|BA|A|1239
4V6K|1|BA|U|1240
4V6K|1|BA|G|1241
*
4V6K|1|BA|C|1296
4V6K|1|BA|G|1297
4V6K|1|BA|U|1298
4V6K|1|BA|A|1299
4V6K|1|BA|G|1300
4V6K|1|BA|U|1301
4V6K|1|BA|C|1302
4V6K|1|BA|C|1303
*
4V6K|1|BA|G|1334
4V6K|1|BA|U|1335
4V6K|1|BA|C|1336
4V6K|1|BA|G|1337

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BK

30S ribosomal protein S7

Chain BQ

30S ribosomal protein S13