J3_4V6K_030

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

4V6K|1|AB|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6K_030 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.5311

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4V6K|1|AB|U|1344
4V6K|1|AB|C|1345
4V6K|1|AB|G|1346
4V6K|1|AB|A|1347
4V6K|1|AB|C|1348
4V6K|1|AB|C|1349
4V6K|1|AB|C|1350
*
4V6K|1|AB|G|1381
4V6K|1|AB|G|1382
4V6K|1|AB|A|1383
4V6K|1|AB|A|1384
4V6K|1|AB|A|1385
*
4V6K|1|AB|U|1402
4V6K|1|AB|A|1403

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AU

50S ribosomal protein L23