J3_4V6L_002
3D structure
- PDB id
- 4V6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.2 Å
Loop
- Sequence
- CGGUU*AGCUUG*CG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6L_002 not in the Motif Atlas
- Homologous match to J3_6CZR_059
- Geometric discrepancy: 0.4029
- The information below is about J3_6CZR_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98561.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V6L|1|AA|C|586
4V6L|1|AA|G|587
4V6L|1|AA|G|588
4V6L|1|AA|U|589
4V6L|1|AA|U|590
*
4V6L|1|AA|A|649
4V6L|1|AA|G|650
4V6L|1|AA|C|651
4V6L|1|AA|U|652
4V6L|1|AA|U|653
4V6L|1|AA|G|654
*
4V6L|1|AA|C|754
4V6L|1|AA|G|755
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AL
- 30S ribosomal protein S8
- Chain AP
- 30S ribosomal protein S12
- Chain AS
- 30S ribosomal protein S15
- Chain AU
- 30S ribosomal protein S17
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