J3_4V6L_016

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6L_016 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.2519

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V6L|1|BB|C|698
4V6L|1|BB|A|699
4V6L|1|BB|G|700
*
4V6L|1|BB|C|732
4V6L|1|BB|G|733
4V6L|1|BB|A|734
4V6L|1|BB|A|735
4V6L|1|BB|C|736
*
4V6L|1|BB|G|760
4V6L|1|BB|A|761
4V6L|1|BB|U|762
4V6L|1|BB|G|763

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BD

50S ribosomal protein L2