J3_4V6M_003
3D structure
- PDB id
- 4V6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ribosome-SecYE complex in the membrane environment
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 4V6M|1|AA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6M_003 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.184
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V6M|1|AA|U|672
4V6M|1|AA|A|673
*
4V6M|1|AA|U|717
4V6M|1|AA|A|718
4V6M|1|AA|C|719
4V6M|1|AA|C|720
4V6M|1|AA|G|721
4V6M|1|AA|G|722
4V6M|1|AA|U|723
4V6M|1|AA|G|724
4V6M|1|AA|G|725
*
4V6M|1|AA|C|732
4V6M|1|AA|G|733
4V6M|1|AA|G|734
Current chains
- Chain AA
- 16S RIBOSOMAL RNA
Nearby chains
- Chain AF
- 30S ribosomal protein S6
- Chain AK
- 30S ribosomal protein S11
- Chain AO
- 30S ribosomal protein S15
- Chain AR
- 30S ribosomal protein S18
- Chain AU
- 30S ribosomal protein S21
- Chain B6
- 50S ribosomal protein L2
Coloring options: