J3_4V6M_027

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

4V6M|1|B8|U|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6M_027 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.3181

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V6M|1|B8|G|2812
4V6M|1|B8|A|2813
4V6M|1|B8|A|2814
4V6M|1|B8|C|2815
*
4V6M|1|B8|G|2831
4V6M|1|B8|U|2832
4V6M|1|B8|U|2833
4V6M|1|B8|G|2834
4V6M|1|B8|A|2835
4V6M|1|B8|U|2836
*
4V6M|1|B8|A|2882
4V6M|1|B8|A|2883
4V6M|1|B8|U|2884
4V6M|1|B8|G|2885
4V6M|1|B8|A|2886
4V6M|1|B8|A|2887
4V6M|1|B8|C|2888

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BN

50S ribosomal protein L17