J3_4V6N_002

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6N_002 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.2415

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V6N|1|AB|G|30
4V6N|1|AB|C|31
*
4V6N|1|AB|G|474
4V6N|1|AB|C|475
4V6N|1|AB|G|476
4V6N|1|AB|A|477
4V6N|1|AB|A|478
4V6N|1|AB|A|479
4V6N|1|AB|A|480
4V6N|1|AB|G|481
*
4V6N|1|AB|C|509
4V6N|1|AB|C|510

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AS

50S ribosomal protein L20

Chain AW

50S ribosomal protein L24