J3_4V6N_006

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6N_006 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.4039

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4V6N|1|AB|G|1055
4V6N|1|AB|G|1056
4V6N|1|AB|A|1057
*
4V6N|1|AB|U|1081
4V6N|1|AB|U|1082
4V6N|1|AB|U|1083
4V6N|1|AB|A|1084
4V6N|1|AB|A|1085
4V6N|1|AB|A|1086
4V6N|1|AB|G|1087
*
4V6N|1|AB|C|1102
4V6N|1|AB|A|1103
4V6N|1|AB|C|1104

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L36

Chain AJ

50S ribosomal protein L10

Chain AK

50S ribosomal protein L11