J3_4V6N_009

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

4V6N|1|AB|A|1384

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6N_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.5275

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V6N|1|AB|U|1344
4V6N|1|AB|C|1345
4V6N|1|AB|G|1346
4V6N|1|AB|A|1347
4V6N|1|AB|C|1348
4V6N|1|AB|C|1349
4V6N|1|AB|C|1350
*
4V6N|1|AB|G|1381
4V6N|1|AB|G|1382
4V6N|1|AB|A|1383
4V6N|1|AB|A|1384
4V6N|1|AB|A|1385
*
4V6N|1|AB|U|1402
4V6N|1|AB|A|1403

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AV

50S ribosomal protein L23