3D structure

PDB id
4V6N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.1 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4V6N|1|AB|U|34, 4V6N|1|AB|U|448, 4V6N|1|AB|C|456, 4V6N|1|AB|A|472
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6N_028 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.2954
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4V6N|1|AB|C|32
4V6N|1|AB|C|33
4V6N|1|AB|U|34
4V6N|1|AB|G|35
*
4V6N|1|AB|C|445
4V6N|1|AB|G|446
4V6N|1|AB|A|447
4V6N|1|AB|U|448
4V6N|1|AB|A|449
4V6N|1|AB|G|450
4V6N|1|AB|U|451
4V6N|1|AB|G|452
4V6N|1|AB|A|453
4V6N|1|AB|A|454
4V6N|1|AB|C|455
4V6N|1|AB|C|456
4V6N|1|AB|A|457
4V6N|1|AB|G|458
4V6N|1|AB|U|459
4V6N|1|AB|A|460
4V6N|1|AB|C|461
*
4V6N|1|AB|G|468
4V6N|1|AB|G|469
4V6N|1|AB|A|470
4V6N|1|AB|A|471
4V6N|1|AB|A|472
4V6N|1|AB|G|473

Current chains

Chain AB
23S ribosomal RNA

Nearby chains

Chain A5
50S ribosomal protein L34
Chain AF
50S ribosomal protein L4
Chain AS
50S ribosomal protein L20
Chain AV
50S ribosomal protein L23

Coloring options:


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