J3_4V6O_014

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6O_014 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.2958

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V6O|1|BB|G|30
4V6O|1|BB|C|31
*
4V6O|1|BB|G|474
4V6O|1|BB|C|475
4V6O|1|BB|G|476
4V6O|1|BB|A|477
4V6O|1|BB|A|478
4V6O|1|BB|A|479
4V6O|1|BB|A|480
4V6O|1|BB|G|481
*
4V6O|1|BB|C|509
4V6O|1|BB|C|510

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L20

Chain BW

50S ribosomal protein L24