J3_4V6O_016

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V6O|1|BB|U|686, 4V6O|1|BB|A|792, 4V6O|1|BB|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6O_016 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.2793

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6O|1|BB|U|683
4V6O|1|BB|G|684
4V6O|1|BB|A|685
4V6O|1|BB|U|686
4V6O|1|BB|C|687
4V6O|1|BB|U|688
4V6O|1|BB|A|689
*
4V6O|1|BB|U|773
4V6O|1|BB|G|774
4V6O|1|BB|G|775
*
4V6O|1|BB|C|791
4V6O|1|BB|A|792
4V6O|1|BB|A|793
4V6O|1|BB|A|794

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2

Chain BF

50S ribosomal protein L4