J3_4V6O_034

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V6O|1|BB|A|504, 4V6O|1|BB|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6O_034 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.2275

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V6O|1|BB|G|30
4V6O|1|BB|C|31
*
4V6O|1|BB|G|474
4V6O|1|BB|C|475
4V6O|1|BB|G|476
4V6O|1|BB|A|477
4V6O|1|BB|A|478
4V6O|1|BB|A|479
4V6O|1|BB|A|480
4V6O|1|BB|G|481
4V6O|1|BB|A|482
4V6O|1|BB|A|483
4V6O|1|BB|C|484
*
4V6O|1|BB|G|496
4V6O|1|BB|A|497
4V6O|1|BB|G|498
4V6O|1|BB|U|499
4V6O|1|BB|G|500
4V6O|1|BB|A|501
4V6O|1|BB|A|502
4V6O|1|BB|A|503
4V6O|1|BB|A|504
4V6O|1|BB|A|505
4V6O|1|BB|G|506
4V6O|1|BB|A|507
4V6O|1|BB|A|508
4V6O|1|BB|C|509
4V6O|1|BB|C|510

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L20

Chain BU

50S ribosomal protein L22

Chain BW

50S ribosomal protein L24