3D structure

PDB id
4V6O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
14.7 Å

Loop

Sequence
GGA*UUUAAAG*CAC
Length
13 nucleotides
Bulged bases
4V6O|1|BB|A|1084
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6O_044 not in the Motif Atlas
Homologous match to J3_9DFE_009
Geometric discrepancy: 0.5361
The information below is about J3_9DFE_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6O|1|BB|G|1055
4V6O|1|BB|G|1056
4V6O|1|BB|A|1057
*
4V6O|1|BB|U|1081
4V6O|1|BB|U|1082
4V6O|1|BB|U|1083
4V6O|1|BB|A|1084
4V6O|1|BB|A|1085
4V6O|1|BB|A|1086
4V6O|1|BB|G|1087
*
4V6O|1|BB|C|1102
4V6O|1|BB|A|1103
4V6O|1|BB|C|1104

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B7
50S ribosomal protein L36
Chain BJ
50S ribosomal protein L10
Chain BK
50S ribosomal protein L11

Coloring options:


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