J3_4V6O_045
3D structure
- PDB id
- 4V6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14.7 Å
Loop
- Sequence
- UG*UGUU*GCAA
- Length
- 10 nucleotides
- Bulged bases
- 4V6O|1|AA|A|1101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6O_045 not in the Motif Atlas
- Homologous match to J3_4LFB_017
- Geometric discrepancy: 0.3934
- The information below is about J3_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_79369.1
- Basepair signature
- cWW-cWW-tSS-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
4V6O|1|AA|U|1073
4V6O|1|AA|G|1074
*
4V6O|1|AA|U|1083
4V6O|1|AA|G|1084
4V6O|1|AA|U|1085
4V6O|1|AA|U|1086
*
4V6O|1|AA|G|1099
4V6O|1|AA|C|1100
4V6O|1|AA|A|1101
4V6O|1|AA|A|1102
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- mRNA
- Chain AE
- 30S ribosomal protein S2
- Chain AF
- 30S ribosomal protein S3
- Chain AH
- 30S ribosomal protein S5
- Chain AX
- 30S ribosomal protein S21
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