J3_4V6P_003
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 4V6P|1|AA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6P_003 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.4037
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V6P|1|AA|U|672
4V6P|1|AA|A|673
*
4V6P|1|AA|U|717
4V6P|1|AA|A|718
4V6P|1|AA|C|719
4V6P|1|AA|C|720
4V6P|1|AA|G|721
4V6P|1|AA|G|722
4V6P|1|AA|U|723
4V6P|1|AA|G|724
4V6P|1|AA|G|725
*
4V6P|1|AA|C|732
4V6P|1|AA|G|733
4V6P|1|AA|G|734
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- mRNA
- Chain AI
- 30S ribosomal protein S6
- Chain AN
- 30S ribosomal protein S11
- Chain AR
- 30S ribosomal protein S15
- Chain AU
- 30S ribosomal protein S18
- Chain AX
- 30S ribosomal protein S21
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