J3_4V6P_014
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- GC*GCGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6P_014 not in the Motif Atlas
- Geometric match to J3_4V9F_011
- Geometric discrepancy: 0.1941
- The information below is about J3_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V6P|1|BB|G|30
4V6P|1|BB|C|31
*
4V6P|1|BB|G|474
4V6P|1|BB|C|475
4V6P|1|BB|G|476
4V6P|1|BB|A|477
4V6P|1|BB|A|478
4V6P|1|BB|A|479
4V6P|1|BB|A|480
4V6P|1|BB|G|481
*
4V6P|1|BB|C|509
4V6P|1|BB|C|510
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain BS
- 50S ribosomal protein L20
- Chain BW
- 50S ribosomal protein L24
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