J3_4V6P_017

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6P_017 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.2707

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V6P|1|BB|C|698
4V6P|1|BB|A|699
4V6P|1|BB|G|700
*
4V6P|1|BB|C|732
4V6P|1|BB|G|733
4V6P|1|BB|A|734
4V6P|1|BB|A|735
4V6P|1|BB|C|736
*
4V6P|1|BB|G|760
4V6P|1|BB|A|761
4V6P|1|BB|U|762
4V6P|1|BB|G|763

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2