J3_4V6P_021

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6P_021 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.2392

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V6P|1|BB|C|2091
4V6P|1|BB|U|2092
4V6P|1|BB|G|2093
*
4V6P|1|BB|C|2196
4V6P|1|BB|U|2197
4V6P|1|BB|A|2198
4V6P|1|BB|A|2199
4V6P|1|BB|C|2200
*
4V6P|1|BB|G|2223
4V6P|1|BB|G|2224
4V6P|1|BB|A|2225
4V6P|1|BB|C|2226
4V6P|1|BB|A|2227
4V6P|1|BB|G|2228

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2

Chain BI

50S ribosomal protein L9

Chain BZ

50S ribosomal protein L28