3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4V6P|1|BB|U|34, 4V6P|1|BB|U|448, 4V6P|1|BB|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6P_032 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.4369
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4V6P|1|BB|C|32
4V6P|1|BB|C|33
4V6P|1|BB|U|34
4V6P|1|BB|G|35
*
4V6P|1|BB|C|445
4V6P|1|BB|G|446
4V6P|1|BB|A|447
4V6P|1|BB|U|448
4V6P|1|BB|A|449
4V6P|1|BB|G|450
4V6P|1|BB|U|451
4V6P|1|BB|G|452
4V6P|1|BB|A|453
4V6P|1|BB|A|454
4V6P|1|BB|C|455
4V6P|1|BB|C|456
4V6P|1|BB|A|457
4V6P|1|BB|G|458
4V6P|1|BB|U|459
4V6P|1|BB|A|460
4V6P|1|BB|C|461
*
4V6P|1|BB|G|468
4V6P|1|BB|G|469
4V6P|1|BB|A|470
4V6P|1|BB|A|471
4V6P|1|BB|A|472
4V6P|1|BB|G|473

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B5
50S ribosomal protein L34
Chain BF
50S ribosomal protein L4
Chain BS
50S ribosomal protein L20
Chain BV
50S ribosomal protein L23

Coloring options:


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