J3_4V6Q_030

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6Q_030 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.1713

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4V6Q|1|AA|C|936
4V6Q|1|AA|A|937
4V6Q|1|AA|A|938
4V6Q|1|AA|G|939
*
4V6Q|1|AA|C|1344
4V6Q|1|AA|U|1345
4V6Q|1|AA|A|1346
4V6Q|1|AA|G|1347
4V6Q|1|AA|U|1348
4V6Q|1|AA|A|1349
4V6Q|1|AA|A|1350
*
4V6Q|1|AA|U|1372
4V6Q|1|AA|G|1373
4V6Q|1|AA|A|1374
4V6Q|1|AA|A|1375
4V6Q|1|AA|U|1376
4V6Q|1|AA|A|1377
4V6Q|1|AA|C|1378
4V6Q|1|AA|G|1379

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AJ

30S ribosomal protein S7

Chain AL

30S ribosomal protein S9