J3_4V6Q_041

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

4V6Q|1|BB|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6Q_041 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.2887

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V6Q|1|BB|C|2517
4V6Q|1|BB|A|2518
4V6Q|1|BB|U|2519
4V6Q|1|BB|C|2520
*
4V6Q|1|BB|G|2545
4V6Q|1|BB|U|2546
4V6Q|1|BB|A|2547
*
4V6Q|1|BB|U|2561
4V6Q|1|BB|U|2562
4V6Q|1|BB|U|2563
4V6Q|1|BB|A|2564
4V6Q|1|BB|A|2565
4V6Q|1|BB|A|2566
4V6Q|1|BB|G|2567

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L13

Chain BM

50S ribosomal protein L14