3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
4V6R|1|AA|U|723
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6R_003 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.3899
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V6R|1|AA|U|672
4V6R|1|AA|A|673
*
4V6R|1|AA|U|717
4V6R|1|AA|A|718
4V6R|1|AA|C|719
4V6R|1|AA|C|720
4V6R|1|AA|G|721
4V6R|1|AA|G|722
4V6R|1|AA|U|723
4V6R|1|AA|G|724
4V6R|1|AA|G|725
*
4V6R|1|AA|C|732
4V6R|1|AA|G|733
4V6R|1|AA|G|734

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AI
30S ribosomal protein S6
Chain AN
30S ribosomal protein S11
Chain AR
30S ribosomal protein S15
Chain AU
30S ribosomal protein S18
Chain AX
30S ribosomal protein S21

Coloring options:


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