3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
4V6R|1|BB|U|2833, 4V6R|1|BB|A|2835, 4V6R|1|BB|U|2884
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6R_025 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.4298
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

4V6R|1|BB|G|2812
4V6R|1|BB|A|2813
4V6R|1|BB|A|2814
4V6R|1|BB|C|2815
*
4V6R|1|BB|G|2831
4V6R|1|BB|U|2832
4V6R|1|BB|U|2833
4V6R|1|BB|G|2834
4V6R|1|BB|A|2835
4V6R|1|BB|U|2836
*
4V6R|1|BB|A|2882
4V6R|1|BB|A|2883
4V6R|1|BB|U|2884
4V6R|1|BB|G|2885
4V6R|1|BB|A|2886
4V6R|1|BB|A|2887
4V6R|1|BB|C|2888

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B3
50S ribosomal protein L32
Chain BE
50S ribosomal protein L3
Chain BP
50S ribosomal protein L17
Chain BU
50S ribosomal protein L22

Coloring options:


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